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  1. Free, publicly-accessible full text available March 1, 2025
  2. Abstract

    Backscatter interferometry (BSI) is a refractive index (RI) detection method that is easily integrated with capillary electrophoresis (CE) and is capable of detecting species ranging from inorganic ions to proteins without additional labels or contrast agents. The BSI signal changes linearly with the square of the separation voltage which has been used to quantify sample injection, but has not been explored as a potential signal enhancement mechanism in CE. Here we develop a mathematical model that predicts a signal enhancement at high field strengths, where the BSI signal is dominated by the voltage dependent mechanism. This is confirmed in both simulation and experiment, which show that the analyte peak area grows linearly with separation voltage at high field strengths. This effect can be exploited by adjusting the background electrolyte (BGE) to increase the conductivity difference between the BGE and analyte zones, which is shown to improve BSI performance. We also show that this approach has utility in small bore capillaries where larger separation fields can be applied before excess Joule heating degrades the separation. Unlike other optical detection methods that generally degrade as the optical pathlength is reduced, the BSI signal-to-noise can improve in small bore capillaries as the larger separation fields enhance the signal.

     
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  3. Benthic organisms in coastal sediments affect elemental cycling and control benthic-pelagic coupling through particle reworking and ventilation of their burrows. Bioirrigation and associated porewater advection create intermittently oxic regions within sediments. The spatio-temporal patterns of such biogenic redox oscillations likely respond to seasonal factors, but quantitative information on the seasonality of bioirrigator behaviors and associated redox dynamics is scarce. We examined bioirrigation by the maldanid polychaete Clymenella torquata and its impacts on sediment oxygenation patterns in permeable sediments using high-resolution planar optode oxygen imaging. In sediment mesocosms with reconstructed summer-collected sediment, the durations of pumping and resting varied inversely with temperature. The average durations of pumping and resting increased from 4 min/4 min at 21 °C, to 6 min/6 min at 12 °C, to 15 min/14 min at 5 °C. In intact cores collected in summer, irrigation patterns (3.5 min/3.5 min) were similar to those observed at 21 °C during the temperature ramp. Pumping and resting durations in intact cores collected in winter at 6 °C averaged 9 min/26 min, significantly different from patterns at comparable temperatures in the temperature ramp. Pumping patterns strongly affected the temporal patterns of redox dynamics in surrounding sediments. In addition, temperature strongly affected burrow irrigation depth (exclusively within the top ∼10 cm at 21 °C, and down to ∼20 cm at 5–6 °C with an apparent transition at ∼15 °C), indicating that the zone with dynamic redox conditions migrates vertically on a seasonal basis. The differences in pumping patterns between in- and out-of-season experiments and the effect of temperature on irrigation depth underscore the importance of conducting experiments with bioturbators in-season and at field temperatures. The observed seasonal differences in bioirrigation patterns and associated spatio-temporal redox dynamics suggest that rates and pathways of redox-sensitive diagenetic processes and benthic chemical fluxes in permeable sediments likely show considerable seasonal variation. 
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    Free, publicly-accessible full text available March 1, 2025
  4. Free, publicly-accessible full text available January 1, 2025
  5. Abstract

    Breaking atmospheric gravity waves (GWs) in the tropical stratosphere are essential in driving the roughly 2‐year oscillation of zonal winds in this region known as the Quasi‐Biennial Oscillation (QBO). As Global Climate Models (GCM)s are not typically able to directly resolve the spectrum of waves required to drive the QBO, parameterizations are necessary. Such parameterizations often require knowledge of poorly constrained physical parameters. In the case of the spectral gravity parameterization used in this work, these parameters are the total equatorial GW stress and the half width of phase speed distribution. Radiosonde observations are used to obtain the period and amplitude of the QBO, which are compared against values obtained from a GCM. We utilize two established calibration techniques to obtain estimates of the range of plausible parameter values: History matching & Ensemble Kalman Inversion (EKI). History matching is found to reduce the size of the initial range of plausible parameters by a factor of 98%, requiring only 60 model integrations. EKI cannot natively provide any uncertainty quantification but is able to produce a single best estimate of the calibrated values in 25 integrations. When directly comparing the approaches using the Calibrate, Emulate, Sample method to produce a posterior estimate from EKI, history matching produces more compact posteriors with fewer model integrations at lower ensemble sizes compared to EKI; however, these differences become less apparent at higher ensemble sizes.

     
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  6. The observed rate of global warming since the 1970s has been proposed as a strong constraint on equilibrium climate sensitivity (ECS) and transient climate response (TCR)—key metrics of the global climate response to greenhouse-gas forcing. Using CMIP5/6 models, we show that the inter-model relationship between warming and these climate sensitivity metrics (the basis for the constraint) arises from a similarity in transient and equilibrium warming patterns within the models, producing an effective climate sensitivity (EffCS) governing recent warming that is comparable to the value of ECS governing long-term warming under CO2forcing. However, CMIP5/6 historical simulations do not reproduce observed warming patterns. When driven by observed patterns, even high ECS models produce low EffCS values consistent with the observed global warming rate. The inability of CMIP5/6 models to reproduce observed warming patterns thus results in a bias in the modeled relationship between recent global warming and climate sensitivity. Correcting for this bias means that observed warming is consistent with wide ranges of ECS and TCR extending to higher values than previously recognized. These findings are corroborated by energy balance model simulations and coupled model (CESM1-CAM5) simulations that better replicate observed patterns via tropospheric wind nudging or Antarctic meltwater fluxes. Because CMIP5/6 models fail to simulate observed warming patterns, proposed warming-based constraints on ECS, TCR, and projected global warming are biased low. The results reinforce recent findings that the unique pattern of observed warming has slowed global-mean warming over recent decades and that how the pattern will evolve in the future represents a major source of uncertainty in climate projections.

     
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    Free, publicly-accessible full text available March 19, 2025
  7. We present two (a decoupled and a coupled) integral-equation-based methods for the Morse-Ingard equations subject to Neumann boundary conditions on the exterior domain. Both methods are based on second-kind integral equation (SKIE) formulations. The coupled method is well-conditioned and can achieve high accuracy. The decoupled method has lower computational cost and more flexibility in dealing with the boundary layer; however, it is prone to the ill-conditioning of the decoupling transform and cannot achieve as high accuracy as the coupled method. We show numerical examples using a Nyström method based on quadrature-by-expansion (QBX) with fast-multipole acceleration. We demonstrate the accuracy and efficiency of the solvers in both two and three dimensions with complex geometry. 
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    Free, publicly-accessible full text available November 1, 2024
  8. Experience management (EM) agents in multiplayer serious games face unique challenges and responsibilities regarding the fair treatment of players. One such challenge is the Greedy Bandit Problem that arises when using traditional Multi-Armed Bandits (MABs) as EM agents, which results in some players routinely prioritized while others may be ignored. We will show that this problem can be a cause of player non-adherence in a multiplayer serious game played by human users. To mitigate this effect, we propose a new bandit strategy, the Shapley Bandit, which enforces fairness constraints in its treatment of players based on the Shapley Value. We evaluate our approach via simulation with virtual players, finding that the Shapley Bandit can be effective in providing more uniform treatment of players while incurring only a slight cost in overall performance to a typical greedy approach. Our findings highlight the importance of fair treatment among players as a goal of multiplayer EM agents and discuss how addressing this issue may lead to more effective agent operation overall. The study contributes to the understanding of player modeling and EM in serious games and provides a promising approach for balancing fairness and engagement in multiplayer environments.

     
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    Free, publicly-accessible full text available October 6, 2024
  9. Permeable sediments, which represent more than 50% of the continental shelves, have been largely neglected as a potential source of Fe in current global estimates of benthic dissolved iron Fed fluxes. There are open questions regarding the effects of a range of factors on Fed fluxes from these deposits, including seasonal dynamics and the role of bioirrigation. To address these gaps, we performed laboratory-based sediment incubation experiments with muddy sands during summer (21 °C) and winter (7 °C). We used bioirrigation mimics to inject overlying water into the permeable sediment with patterns resembling the bioirrigation activity of the prolific bioturbating polychaete,Clymenella torquata. Newly developed in-line Fe accumulators were used to estimate Fe fluxes with a recirculating set-up. We found high Fed fluxes from sandy sediments, especially in benthic chambers with simulated bioirrigation. In the winter fluxes reached 200 µmol Fed m-2 d-1 at the onset of irrigation and then decreased over the course of a 13-day experiment while in the summer fluxes from irrigated sediments reached 100 µmol Fed m-2 d-1 and remained high throughout a 7-day experiment. Despite different geochemical expressions of Fe-S cycling and resulting porewater Fed concentrations in winter and summer, large Fed fluxes were sustained during both seasons. Solid-phase and porewater concentration profiles showed that maximum concentrations of key constituents, including total solid-phase reactive Fe, and porewater Fed and ammonium, were located closer to the sediment water interface (SWI) in irrigated cores than in non-irrigated cores due to the upward advective transport of dissolved porewater constituents. This upward transport also facilitated Fed fluxes out of the sediments, especially during times of active pumping. Our study demonstrates the potential for large Fed fluxes from sandy sediments in both summer and winter, despite relatively low standing stocks of labile organic matter and porewater Fed. The primary driver of these high fluxes was advective porewater transport, in our study induced by the activity of infaunal organisms. These results suggest that permeable sediments, which dominate shelf regions, must be explicitly considered in global estimates of benthic Fed fluxes, and cannot be simply extrapolated from estimates based on muddy sediments. 
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    Free, publicly-accessible full text available November 21, 2024
  10. Abstract

    Fluid-mediated calcium metasomatism is often associated with strong silica mobility and the presence of chlorides in solution. To help quantify mass transfer at lower crustal and upper mantle conditions, we measured quartz solubility in H2O-CaCl2 solutions at 0.6–1.4 GPa, 600–900 °C, and salt concentrations to 50 mol%. Solubility was determined by weight loss of single-crystals using hydrothermal piston-cylinder methods. All experiments were conducted at salinity lower than salt saturation. Quartz solubility declines exponentially with added CaCl2 at all conditions investigated, with no evidence for complexing between silica and Ca. The decline in solubility is similar to that in H2O-CO2 but substantially greater than that in H2O-NaCl at the same pressure and temperature. At each temperature, quartz solubility at low salinity (XCaCl2 < 0.1) depends strongly on pressure, whereas at higher XCaCl2 it is nearly pressure independent. This behavior is consistent with a transition from an aqueous solvent to a molten salt near XCaCl2 ~0.1. The solubility data were used to develop a thermodynamic model of H2O-CaCl2 fluids. Assuming ideal molten-salt behavior and utilizing previous models for polymerization of hydrous silica, we derived values for the activity of H2O (aH2O), and for the CaCl2 dissociation factor (α), which may vary from 0 (fully associated) to 2 (fully dissociated). The model accurately reproduces our data along with those of previous work and implies that, at conditions of this study, CaCl2 is largely associated (<0.2) at H2O density <0.85 g/cm3. Dissociation rises isothermally with increasing density, reaching ~1.4 at 600 °C, 1.4 GPa. The variation in silica molality with aH2O in H2O-CaCl2 is nearly identical to that in H2O-CO2 solutions at 800 °C and 1.0 GPa, consistent with the absence of Ca-silicate complexing. The results suggest that the ionization state of the salt solution is an important determinant of aH2O, and that H2O-CaCl2 fluids exhibit nearly ideal molecular mixing over a wider range of conditions than implied by previous modeling. The new data help interpret natural examples of large-scale Ca-metasomatism in a wide range of lower crustal and upper mantle settings.

     
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    Free, publicly-accessible full text available October 1, 2024